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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBaseConverter
public final class PluginSBaseConverter
PluginSBaseConverter
Constructor Summary | |
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PluginSBaseConverter()
|
Method Summary | |
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static PluginAntiSenseRNA |
convertToPluginAntiSenseRNA(jp.sbi.celldesigner.sbmlExtension.AntiSenseRNA target)
Converts AntiSenseRNA to PluginAntiSenseRNA |
static PluginCompartment |
convertToPluginCompartment(Compartment compartment,
jp.sbi.celldesigner.sbmlExtension.CompartmentAnnotation annotation)
Converts Compartment to PluginCompartment |
static PluginCompartmentType |
convertToPluginCompartmentType(CompartmentType compartmentType)
|
static PluginConstraint |
convertToPluginConstraint(Constraint constraint)
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static PluginEvent |
convertToPluginEvent(Event event)
Converts Event to PluginEvent |
static PluginEventAssignment |
convertToPluginEventAssignment(EventAssignment event,
PluginEvent parent)
Converts EventAssignment to PluginEventAssignment |
static PluginFunctionDefinition |
convertToPluginFunctionDefinition(FunctionDefinition function)
Converts FunctionDefinition to PluginFunctionDefinition |
static PluginGene |
convertToPluginGene(jp.sbi.celldesigner.sbmlExtension.Gene target)
Converts Gene to PluginGene |
static PluginInitialAssignment |
convertToPluginInitialAssignment(InitialAssignment initialAssignment)
|
static PluginKineticLaw |
convertToPluginKineticLaw(KineticLaw law,
PluginReaction parent)
Converts KineticLaw to PluginKineticLaw |
static PluginModel |
convertToPluginModel(Model model)
Converts Model to PluginModel |
static PluginModel |
convertToPluginModel(Model model,
jp.sbi.celldesigner.SBModel sbModel)
Converts Model to PluginModel |
static PluginModifierSpeciesReference |
convertToPluginModifierSpeciesReference(ModifierSpeciesReference ref,
PluginReaction parent,
jp.sbi.celldesigner.ReactionLink link,
jp.sbi.celldesigner.sbmlExtension.SpeciesReferenceAnnotation anno,
PluginSpecies psp)
Convers ModifierSpeciesReference to PluginModifierSpeciesReference |
static PluginParameter |
convertToPluginParameter(Parameter param,
PluginKineticLaw parent)
Converts Parameter to PluginParameter |
static PluginParameter |
convertToPluginParameter(Parameter param,
PluginModel parent)
Converts Parameter to PluginParameter |
static PluginProtein |
convertToPluginProtein(jp.sbi.celldesigner.sbmlExtension.Protein target)
Converts Protein to PluginProtein |
static PluginReaction |
convertToPluginReaction(Reaction reaction,
jp.sbi.celldesigner.sbmlExtension.ReactionAnnotation annotation)
Converts Reaction to PluginReaction |
static PluginRNA |
convertToPluginRNA(jp.sbi.celldesigner.sbmlExtension.RNA target)
Converts RNA to PluginRNA |
static PluginRule |
convertToPluginRule(Rule rule,
PluginModel parent)
Converts Rule to PluginRule |
static PluginSBase |
convertToPluginSBase(SBase sbase)
Converts SBase to PluginSBase |
static PluginSpecies |
convertToPluginSpecies(Species species,
jp.sbi.celldesigner.sbmlExtension.SpeciesAnnotation annotation)
Converts Species to PluginSpecies |
static PluginSpeciesAlias |
convertToPluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias alias,
PluginSpecies parent)
Convers SpeciesAlias to PluginSpeciesAlias |
static PluginSpeciesReference |
convertToPluginSpeciesReference(SpeciesReference ref,
PluginReaction parent,
jp.sbi.celldesigner.sbmlExtension.SpeciesReferenceAnnotation anno,
PluginSpecies psp)
Converts SpeciesReference to PluginSpeciesReference |
static PluginSpeciesType |
convertToPluginSpeciesType(SpeciesType speciesType)
|
static PluginUnit |
convertToPluginUnit(Unit unit,
PluginUnitDefinition parent)
Converts Unit to PluginUnit |
static PluginUnitDefinition |
convertToPluginUnitDefinition(UnitDefinition unit)
Converts UnitDefinition to PluginUnitDefinition |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PluginSBaseConverter()
Method Detail |
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public static final PluginSpeciesAlias convertToPluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias alias, PluginSpecies parent)
alias
- parent
-
public static final PluginSBase convertToPluginSBase(SBase sbase)
sbase
-
public static final PluginModel convertToPluginModel(Model model)
model
- public static final PluginModel convertToPluginModel(Model model, jp.sbi.celldesigner.SBModel sbModel)
model
- sbModel
- public static final PluginProtein convertToPluginProtein(jp.sbi.celldesigner.sbmlExtension.Protein target)
target
- Proteinpublic static final PluginGene convertToPluginGene(jp.sbi.celldesigner.sbmlExtension.Gene target)
target
- Genepublic static final PluginAntiSenseRNA convertToPluginAntiSenseRNA(jp.sbi.celldesigner.sbmlExtension.AntiSenseRNA target)
target
- public static final PluginRNA convertToPluginRNA(jp.sbi.celldesigner.sbmlExtension.RNA target)
target
- RNApublic static final PluginSpecies convertToPluginSpecies(Species species, jp.sbi.celldesigner.sbmlExtension.SpeciesAnnotation annotation)
species
- annotation
-
public static final PluginReaction convertToPluginReaction(Reaction reaction, jp.sbi.celldesigner.sbmlExtension.ReactionAnnotation annotation)
reaction
- annotation
- public static final PluginCompartment convertToPluginCompartment(Compartment compartment, jp.sbi.celldesigner.sbmlExtension.CompartmentAnnotation annotation)
compartment
- annotation
-
public static final PluginEvent convertToPluginEvent(Event event)
event
- public static final PluginEventAssignment convertToPluginEventAssignment(EventAssignment event, PluginEvent parent)
event
- parent
- public static final PluginKineticLaw convertToPluginKineticLaw(KineticLaw law, PluginReaction parent)
law
- parent
- public static final PluginParameter convertToPluginParameter(Parameter param, PluginKineticLaw parent)
param
- parent
- public static final PluginParameter convertToPluginParameter(Parameter param, PluginModel parent)
param
- parent
- public static final PluginSpeciesReference convertToPluginSpeciesReference(SpeciesReference ref, PluginReaction parent, jp.sbi.celldesigner.sbmlExtension.SpeciesReferenceAnnotation anno, PluginSpecies psp)
ref
- SpeciesReferenceparent
- PluginReactionanno
- SpeciesAnnotationpsp
- PluginSpeciespublic static final PluginModifierSpeciesReference convertToPluginModifierSpeciesReference(ModifierSpeciesReference ref, PluginReaction parent, jp.sbi.celldesigner.ReactionLink link, jp.sbi.celldesigner.sbmlExtension.SpeciesReferenceAnnotation anno, PluginSpecies psp)
ref
- ModifierSpeciesReferenceparent
- PluginReactionlink
- ReactionLinkanno
- SpeciesReferenceAnnotationpsp
- PluginSpeciespublic static final PluginFunctionDefinition convertToPluginFunctionDefinition(FunctionDefinition function)
function
-
public static final PluginRule convertToPluginRule(Rule rule, PluginModel parent)
rule
-
public static final PluginUnitDefinition convertToPluginUnitDefinition(UnitDefinition unit)
unit
- public static final PluginUnit convertToPluginUnit(Unit unit, PluginUnitDefinition parent)
unit
- parent
- public static final PluginSpeciesType convertToPluginSpeciesType(SpeciesType speciesType)
public static final PluginCompartmentType convertToPluginCompartmentType(CompartmentType compartmentType)
public static final PluginInitialAssignment convertToPluginInitialAssignment(InitialAssignment initialAssignment)
public static final PluginConstraint convertToPluginConstraint(Constraint constraint)
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