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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginSpeciesAlias
public class PluginSpeciesAlias
PluginSpeciesAlias has drawing information such as position, color, name and type.
Field Summary |
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Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
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PluginSpeciesAlias(PluginSpecies parent,
java.lang.String type)
Constructor |
protected |
PluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias speciesAlias,
PluginSpecies parent)
Constructor |
Method Summary | |
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java.lang.String |
getAliasID()
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java.util.Vector |
getAllIncludedSpeciesAliases()
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PluginAntiSenseRNA |
getAntiSenseRNA()
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java.awt.Color |
getColor()
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java.lang.String |
getExtensionId()
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java.lang.String |
getExtensionType()
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double |
getFrameLineWidth()
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PluginGene |
getGene()
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double |
getHeight()
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int |
getHomodimer()
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boolean |
getHypothetical()
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PluginListOf |
getModifications()
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java.lang.String |
getName()
|
XMLNode |
getNotes()
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java.lang.String |
getNotesString()
|
PluginInformationBox |
getPluginInformationBox()
|
PluginListOf |
getPluginListOfStructuralStates()
Gets a list of PluginStructuralStates |
PluginProtein |
getProtein()
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PluginRNA |
getRNA()
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PluginSpecies |
getSpecies()
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java.lang.String |
getType()
|
double |
getWidth()
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double |
getX()
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double |
getY()
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boolean |
isActive()
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static java.util.Vector |
resetAllIncludedPluginSpeciesAliases(PluginModel pluginMode,
PluginSpeciesAlias someone)
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void |
setAllIncludedSpeciesAliases(java.util.Vector includeds)
|
void |
setAntiSenseRNA(PluginAntiSenseRNA asrna)
Sets the PluginAntiSenseRNA of this PluginSpeciesAlias. |
void |
setColor(java.awt.Color color)
Sets the color of this PluginSpeciesAlias. |
void |
setFrameLineWidth(double lineWidth)
Sets the FrameLineWidth of this PluginSpeciesAlias. |
void |
setFramePosition(double x,
double y)
Sets the position for this PluginSpeciesAlias. |
void |
setFrameSize(double width,
double height)
Sets the FrameSize (width & height) for this PluginSpeciesAlias |
void |
setGene(PluginGene gene)
Sets the PluginGene of this PluginSpeciesAlias. |
void |
setHomodimer(int homodimer)
Sets the homodimer of this PluginSpeciesAlias. |
void |
setHypothetical(boolean hypothetical)
Sets the hypothetical of this PluginSpeciesAlias. |
void |
setIsActive(boolean activity)
Sets activity |
void |
setModifications(PluginListOf modifications)
Sets the list of PluginModification of this PluginSpeciesAlias. |
void |
setName(java.lang.String name)
Sets the name of this PluginSpeciesAlias |
void |
setPluginInformationBox(PluginInformationBox _PluginInformationBox)
|
void |
setPluginListOfStructuralStates(PluginListOf _listOfPluginStructuralStates)
Sets a list of PluginStructuralStates |
void |
setProtein(PluginProtein protein)
Sets the PluginProtein of this PluginSpeciesAlias. |
void |
setRNA(PluginRNA rna)
Sets the PluginRNA of this PluginSpeciesAlias. |
protected void |
setSpecies(PluginSpecies parentSpecies)
Sets the PluginSpecies of this PluginSpeciesAlias. |
void |
setType(java.lang.String type)
Sets the type of this PluginSpeciesAlias. |
void |
update(PluginSpeciesAlias target)
Update all properties of this PluginSpeciesAlias to the same as the given PluginSpeciesAlias. |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PluginSpeciesAlias(PluginSpecies parent, java.lang.String type)
parent
- PluginSpecies as the parent of this PluginSpeciesAliastype
- the type of PluginSpeciesAlias. The type is one of the fields of PluginSpeciesSymbolType.protected PluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias speciesAlias, PluginSpecies parent)
speciesAlias
- parent
- Method Detail |
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public java.util.Vector getAllIncludedSpeciesAliases()
public void setAllIncludedSpeciesAliases(java.util.Vector includeds)
public void update(PluginSpeciesAlias target)
target
- public PluginSpecies getSpecies()
protected void setSpecies(PluginSpecies parentSpecies)
parentSpecies
- public java.lang.String getType()
public java.lang.String getExtensionType()
public void setType(java.lang.String type)
public void setName(java.lang.String name)
name
- public java.lang.String getName()
public java.lang.String getAliasID()
public double getX()
public double getY()
public double getWidth()
public double getHeight()
public void setFrameSize(double width, double height)
width
- height
- public void setFramePosition(double x, double y)
x
- y
- public int getHomodimer()
public void setHomodimer(int homodimer)
homodimer
- the number of the field "homomultimer" of Speciespublic boolean getHypothetical()
public void setHypothetical(boolean hypothetical)
hypothetical
- true if this PluginSpeciesAlias is hypothetical, false otherwisepublic void setColor(java.awt.Color color)
color
- public java.awt.Color getColor()
the
- color of this PluginSpeciesAliaspublic double getFrameLineWidth()
public void setFrameLineWidth(double lineWidth)
lineWidth
- public java.lang.String getExtensionId()
public PluginAntiSenseRNA getAntiSenseRNA()
public void setAntiSenseRNA(PluginAntiSenseRNA asrna)
asrna
- PluginAntiSenseRNApublic PluginGene getGene()
public void setGene(PluginGene gene)
gene
- public PluginProtein getProtein()
public void setProtein(PluginProtein protein)
protein
- public PluginRNA getRNA()
public void setRNA(PluginRNA rna)
rna
- public java.lang.String getNotesString()
getNotesString
in class PluginSBase
public XMLNode getNotes()
getNotes
in class PluginSBase
public PluginListOf getModifications()
public void setModifications(PluginListOf modifications)
modifications
- public void setIsActive(boolean activity)
activity
- public boolean isActive()
public PluginListOf getPluginListOfStructuralStates()
public void setPluginListOfStructuralStates(PluginListOf _listOfPluginStructuralStates)
listOfPluginStructuralStates
- public PluginInformationBox getPluginInformationBox()
public void setPluginInformationBox(PluginInformationBox _PluginInformationBox)
public static final java.util.Vector resetAllIncludedPluginSpeciesAliases(PluginModel pluginMode, PluginSpeciesAlias someone)
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