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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginProtein
public class PluginProtein
This class represents Protein.
Field Summary |
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Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
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protected |
PluginProtein()
Constructor |
protected |
PluginProtein(java.lang.String extensionId)
Constructor |
Method Summary | |
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void |
addPluginBindingRegion(PluginBindingRegion bindingRegion)
Adds a PluginBindingRegion to the list. |
void |
addPluginModificationResidue(PluginModificationResidue residue)
Adds a PluginModificationResidue to the list. |
java.lang.String |
getExtensionId()
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PluginListOf |
getListOfPluginBindingRegion()
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PluginListOf |
getListOfPluginResidue()
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java.lang.String |
getName()
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int |
getNumBindingRegions()
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int |
getNumResidues()
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PluginBindingRegion |
getPluginBindingRegion(int index)
Gets the PluginBindingRegion with the given index. |
PluginModificationResidue |
getPluginModificationResidue(int index)
Gets the PluginModificationResidue with the given index. |
java.lang.String |
getType()
|
void |
removePluginBindingRegion(int index)
Removes the PluginBindingRegion with the given index from the list. |
void |
removePluginBindingRegion(PluginBindingRegion bindingRegion)
Removes the given PluginBindingRegion from the list. |
void |
removePluginModificationResidue(int index)
Removes the PluginModificationResidue with the given index from the list. |
void |
removePluginModificationResidue(PluginModificationResidue residue)
Removes the given PluginModificationResidue from the list. |
void |
setListOfPluginBindingRegion(PluginListOf listOfPluginBindingRegion)
Sets the list of PluginBindingRegion of this PluginProtein. |
void |
setListOfPluginResidue(PluginListOf listOfPluginResidue)
Sets the list of PluginModificationResidue of this PluginProtein. |
void |
setName(java.lang.String name)
Sets the name of this PluginProtein. |
void |
setType(java.lang.String type)
Sets the type of this PluginProtein. |
void |
update(PluginProtein rna)
Update all properties of this PluginProtein to the same as the given PluginProtein |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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protected PluginProtein()
protected PluginProtein(java.lang.String extensionId)
extensionId
- Method Detail |
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public void update(PluginProtein rna)
rna
- PluginProteinpublic java.lang.String getExtensionId()
public java.lang.String getName()
public void setName(java.lang.String name)
name
- public java.lang.String getType()
public void setType(java.lang.String type)
type
- public PluginListOf getListOfPluginResidue()
public void setListOfPluginResidue(PluginListOf listOfPluginResidue)
listOfPluginResidue
- public void addPluginModificationResidue(PluginModificationResidue residue)
residue
- PluginModificationResiduepublic void removePluginModificationResidue(PluginModificationResidue residue)
residue
- public void removePluginModificationResidue(int index)
index
- public PluginModificationResidue getPluginModificationResidue(int index)
index
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public int getNumResidues()
public PluginListOf getListOfPluginBindingRegion()
public void setListOfPluginBindingRegion(PluginListOf listOfPluginBindingRegion)
listOfPluginBindingRegion
- public void addPluginBindingRegion(PluginBindingRegion bindingRegion)
bindingRegion
- PluginBindingRegionpublic void removePluginBindingRegion(PluginBindingRegion bindingRegion)
bindingRegion
- public void removePluginBindingRegion(int index)
index
- public PluginBindingRegion getPluginBindingRegion(int index)
index
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public int getNumBindingRegions()
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