jp.sbi.celldesigner.plugin
Class PluginAntiSenseRNA

java.lang.Object
  extended by jp.sbi.celldesigner.plugin.PluginSBase
      extended by jp.sbi.celldesigner.plugin.PluginAntiSenseRNA

public class PluginAntiSenseRNA
extends PluginSBase

This class represents anti sense RNA.

Author:
mki

Field Summary
 
Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase
sbase
 
Constructor Summary
protected PluginAntiSenseRNA()
          Constructor
protected PluginAntiSenseRNA(java.lang.String extensionId)
          Constructor
 
Method Summary
 void addPluginModificationRegion(PluginModificationRegion residue)
          Adds PluginModificationRegion
 java.lang.String getExtensionId()
           
 PluginListOf getListOfPluginRegion()
           
 java.lang.String getName()
           
 int getNumRegions()
           
 PluginModificationRegion getPluginModificationRegion(int index)
          Gets the PluginModificationRegion with the given index.
 java.lang.String getType()
           
 void removePluginModificationRegion(int index)
          Remove the PluginModificationRegion with the given index.
 void removePluginModificationRegion(PluginModificationRegion residue)
          Removes the given PluginModificationRegion.
 void setListOfPluginRegion(PluginListOf listOfPluginRegion)
          Sets the list of PluginModificationRegion
 void setName(java.lang.String name)
          Sets the name of this PluginAntiSenseRNA
 void setType(java.lang.String type)
          Sets the type of this PluginAntiSenseRNA
 void update(PluginAntiSenseRNA rna)
          Updates all properties to the same as the given PluginAntiSenseRNA.
 
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase
addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PluginAntiSenseRNA

protected PluginAntiSenseRNA()
Constructor


PluginAntiSenseRNA

protected PluginAntiSenseRNA(java.lang.String extensionId)
Constructor

Parameters:
extensionId - extensionID is proteinID, rnaID, geneID, or asRNAID
Method Detail

update

public void update(PluginAntiSenseRNA rna)
Updates all properties to the same as the given PluginAntiSenseRNA.

Parameters:
rna - PluginAntiSenseRNA

getExtensionId

public java.lang.String getExtensionId()
Returns:
the extensionId of this PluginAntiSenseRNA

getName

public java.lang.String getName()
Returns:
the name of this PluginAntiSenseRNA

setName

public void setName(java.lang.String name)
Sets the name of this PluginAntiSenseRNA

Parameters:
name - the name of this PluginAntiSenseRNA

getType

public java.lang.String getType()
Returns:
the type of this PluginAntiSenseRNA

setType

public void setType(java.lang.String type)
Sets the type of this PluginAntiSenseRNA

Parameters:
type - the type of this PluginAntiSenseRNA

getListOfPluginRegion

public PluginListOf getListOfPluginRegion()
Returns:
the list of PluginModificationRegion.

setListOfPluginRegion

public void setListOfPluginRegion(PluginListOf listOfPluginRegion)
Sets the list of PluginModificationRegion

Parameters:
listOfPluginRegion - the list of PluginModificationRegion

addPluginModificationRegion

public void addPluginModificationRegion(PluginModificationRegion residue)
Adds PluginModificationRegion

Parameters:
residue - PluginModificationRegion

removePluginModificationRegion

public void removePluginModificationRegion(PluginModificationRegion residue)
Removes the given PluginModificationRegion.

Parameters:
residue -

removePluginModificationRegion

public void removePluginModificationRegion(int index)
Remove the PluginModificationRegion with the given index.

Parameters:
index -

getPluginModificationRegion

public PluginModificationRegion getPluginModificationRegion(int index)
Gets the PluginModificationRegion with the given index.

Parameters:
index -
Returns:
PluginModificationRegion

getNumRegions

public int getNumRegions()
Returns:
the number of PluginModificationRegion.