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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginKineticLaw
public class PluginKineticLaw
This class wraps org.sbml.libsbml.KineticLaw for the plug-in.
Field Summary |
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Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
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PluginKineticLaw(PluginReaction parent)
Constructor |
Method Summary | |
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void |
addParameter(PluginParameter param)
Adds a PluginParameter to the list of PluginParameter of this PluginKineticLaw. |
void |
clear()
Clears all PluginParameter of this PluginKineticLaw. |
java.lang.String |
getFormula()
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PluginListOf |
getListOfParameters()
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ASTNode |
getMath()
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int |
getNumParameters()
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PluginParameter |
getParameter(int index)
Gets the PluginParameter with the given index from the list. |
PluginReaction |
getParentReaction()
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java.lang.String |
getParentReactionID()
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java.lang.String |
getSubstanceUnits()
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java.lang.String |
getTimeUnits()
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void |
removeParameter(int index)
Remove the PluginParameter with the given index from the list. |
void |
removeParameter(PluginParameter param)
Removes the PluginParameter from the list of PluginParameter of this PluginKineticLaw. |
void |
setFormula(java.lang.String fomula)
Sets the formula of this PluginKineticLaw. |
void |
setFormulaFromMath()
Deprecated. setFormulaFromMath is removed in libSBML 3.x |
void |
setListOfParameters(PluginListOf listOfParameters)
Sets the list of PluginParameter of this PluginKineticLaw. |
void |
setMath(ASTNode math)
Sets the Math of this PluginKineticLaw to the given ASTNode. |
void |
setMathFromFormula()
Deprecated. setFormulaFromMath is removed in libSBML 3.x |
void |
setSubstanceUnits(java.lang.String unit)
Sets the substanceUnits of this PluginKineticLaw. |
void |
setTimeUnits(java.lang.String unit)
Sets the timeUnits of this PluginKineticLaw. |
void |
update(PluginKineticLaw kineticLaw)
Update all properties of this PluginKineticLaw same as the given PluginKineticLaw. |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PluginKineticLaw(PluginReaction parent)
parent
- PluginReaction as the parent of this PluginKineticLawMethod Detail |
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public void update(PluginKineticLaw kineticLaw)
kineticLaw
- public PluginListOf getListOfParameters()
public void setListOfParameters(PluginListOf listOfParameters)
listOfParameters
- public void addParameter(PluginParameter param)
param
- public void removeParameter(PluginParameter param)
param
- the PluginParameter to removepublic void removeParameter(int index)
index
- public PluginParameter getParameter(int index)
index
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public void clear()
public java.lang.String getFormula()
public void setFormula(java.lang.String fomula)
fomula
- public ASTNode getMath()
public void setMath(ASTNode math)
math
- public void setFormulaFromMath()
org.sbml.libsbml.KineticLaw.setFormulaFromMath
public void setMathFromFormula()
org.sbml.libsbml.KineticLaw.setMathFromFormula
public java.lang.String getSubstanceUnits()
public void setSubstanceUnits(java.lang.String unit)
unit
- a substanceUnitspublic java.lang.String getTimeUnits()
public void setTimeUnits(java.lang.String unit)
unit
- public java.lang.String getParentReactionID()
public PluginReaction getParentReaction()
public int getNumParameters()
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