CellDesigner Help

Notes

The Notes allows you to type in additional text information for your Component and save it in the xml file.

The Notes should be written in XHTML format.

You can enter PubMed ID in the Notes, and directly link to the relevant reference.

Connect to Databases

To add Notes to a Component (i.e. Compartment, Species or Reaction)

  1. Select a Component.
  2. Do one of the followings:
    • Click on the right mouse button to display the popup menu and select Species Notes... (Compartment Notes... or Reaction Notes...).
    • If you select a Protein, Gene, RNA or asRNA, you will also find [Protein | Gene | RNA | asRNA] Notes menu item in the right-click menu. See the next procedure on how to use it.

    • Click NOTE tab in the Notes Area (at the bottom right corner of the Main Window) and click Edit Notes button.
    • If you select a Protein, Gene, RNA or asRNA, you will also find Edit [Protein | Gene | RNA | asRNA] Notes button in the Notes Area. See the next procedure on how to use it.

  3. See that the Species Notes (Compartment Notes... or Reaction Notes...) dialog pops up.
    Species Notes dialog
  4. Type the text you want to add in XHTML format.
  5. Click OK to close the dialog
  6. See the Notes information you have just added is displayed in the Notes Area.

To add Notes to a Protein, Gene, RNA or asRNA

If your target Species is one of the following types, namely, Protein, Gene, RNA or asRNA, you can add the [Protein | Gene | RNA | asRNA] Notes as well as the Species Notes.

  1. Select a Protein, Gene, RNA or asRNA.
  2. Do one of the followings:
    • Click on the right mouse button to display the popup menu and select Edit [Protein | Genes | RNA | asRNA] Notes
    • Click Edit [Protein | Genes | RNA | asRNA] Notes button in the Notes Area (on the bottom right corner of the window).
  3. [Protein | Genes | RNA | asRNA] Notes dialog pops up.
  4. Type the text you want to add in XHTML format.
  5. Click OK to close the dialog
  6. See the Notes information you have just added is displayed in the Notes Area.
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