CellDesigner is a software for modeling and simulation of biochemical
and gene regulatory networks, originally developed by the Systems
Biology Institute in Japan. While CellDesigner itself is a
sophisticated structured diagram editor, it enables users to directly
integrate various tools, such as built-in SBML ODE Solver and
SBW-powered simulation/analysis modules. In this course, we will
explain how CellDesigner can be used from both modeling and software
development perspectives. The first topic will feature network
modeling using CellDesigner, and will show how she/he could build a
model from scratch, and examine simulations. The second topic will
feature plugin development of CellDesigner, which allows users to
manipulate network diagram in many ways (for example changing the
color/size of node, reflecting experimental data etc.).
This tutorial will cover both modeling and software development topics, thus both CellDesigner users and software developers are encouraged to join. Bringing your notebook PC is highly recommended.
The Presentation file is available here (PDF, 5.8MB)
The Systems Biology Institute / Kitano Symbiotic Systems Project, JST ERATO-SORST