jp.sbi.celldesigner.plugin.util

Class PluginSpeciesSymbolType

java.lang.Object

jp.sbi.celldesigner.plugin.util.PluginSpeciesSymbolType

public class PluginSpeciesSymbolType
extends java.lang.Object

This class defines ReactionType for PluginReaction.

Author:

The Systems Biology Institute

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ANTISENSE_RNA ANTISENSE_RNA
static java.lang.String	COMPLEX COMPLEX
static java.lang.String	DEGRADED DEGRADED
static java.lang.String	DRUG
static java.lang.String	GENE GENE
static java.lang.String	ION ION
static java.lang.String	PHENOTYPE PHENOTYPE
static java.lang.String	PROTEIN PROTEIN
static java.lang.String	PROTEIN_GENERIC GENERIC
static java.lang.String	PROTEIN_ION_CHANNEL ION_CHANNEL
static java.lang.String	PROTEIN_RECEPTOR RECEPTOR
static java.lang.String	PROTEIN_TRUNCATED TRUNCATED
static java.lang.String	RNA RNA
static java.lang.String	SIMPLE_MOLECULE SIMPLE_MOLECULE
static java.lang.String	UNKNOWN UNKNOWN

Constructor Summary

Constructors

Constructor and Description
PluginSpeciesSymbolType()

Method Summary

Modifier and Type	Method and Description
static java.awt.Color	getDefaultColor(java.lang.String speciesType) Gets the default color of the given speciesType.
static double	getDefaultLineWidth(java.lang.String speciesType) Gets the default linewidth of the given speciesType.
static java.awt.Dimension	getDefaultSize(java.lang.String speciesType) Gets the default size of the given speciesType.
static boolean	isValidProteinsType(PluginProtein sp)
static boolean	isValidSpeciesAliasType(PluginSpeciesAlias sp)
static boolean	isValidSpeciesType(PluginSpecies sp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROTEIN

public static final java.lang.String PROTEIN

PROTEIN

See Also:

Constant Field Values

PROTEIN_GENERIC

public static final java.lang.String PROTEIN_GENERIC

GENERIC

See Also:

Constant Field Values

PROTEIN_RECEPTOR

public static final java.lang.String PROTEIN_RECEPTOR

RECEPTOR

See Also:

Constant Field Values

PROTEIN_ION_CHANNEL

public static final java.lang.String PROTEIN_ION_CHANNEL

ION_CHANNEL

See Also:

Constant Field Values

PROTEIN_TRUNCATED

public static final java.lang.String PROTEIN_TRUNCATED

TRUNCATED

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Constant Field Values

GENE

public static final java.lang.String GENE

GENE

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Constant Field Values

RNA

public static final java.lang.String RNA

RNA

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Constant Field Values

ANTISENSE_RNA

public static final java.lang.String ANTISENSE_RNA

ANTISENSE_RNA

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Constant Field Values

PHENOTYPE

public static final java.lang.String PHENOTYPE

PHENOTYPE

See Also:

Constant Field Values

ION

public static final java.lang.String ION

ION

See Also:

Constant Field Values

SIMPLE_MOLECULE

public static final java.lang.String SIMPLE_MOLECULE

SIMPLE_MOLECULE

See Also:

Constant Field Values

UNKNOWN

public static final java.lang.String UNKNOWN

UNKNOWN

See Also:

Constant Field Values

COMPLEX

public static final java.lang.String COMPLEX

COMPLEX

See Also:

Constant Field Values

DEGRADED

public static final java.lang.String DEGRADED

DEGRADED

See Also:

Constant Field Values

DRUG

public static final java.lang.String DRUG

See Also:

Constant Field Values

Constructor Detail

PluginSpeciesSymbolType

public PluginSpeciesSymbolType()

Method Detail

isValidSpeciesAliasType

public static boolean isValidSpeciesAliasType(PluginSpeciesAlias sp)

Parameters:

sp - PluginSpeciesAlias

Returns:

true if type of the given PluginSpeciesAlias is the one of the following fields of this PluginSpeciesSymbolType: ANTISENSE_RNA, COMPLEX, GENE, ION, PHENOTYPE, RNA, SIMPLE_MOLECULE, UNKNOWN, PROTEIN and DEGRADED, false otherwise.

isValidSpeciesType

public static boolean isValidSpeciesType(PluginSpecies sp)

Parameters:

sp - PluginSpecies

Returns:

true if the extensionType of the given PluginSpecies is the one of the following fields of this PluginSpeciesSymbolType: PROTEIN_GENERIC, PROTEIN_ION_CHANNEL, PROTEIN_RECEPTOR, PROTEIN_TRUNCATED, ANTISENSE_RNA, COMPLEX, GENE, ION, PHENOTYPE, RNA, SIMPLE_MOLECULE, PROTEIN, UNKNOWN DEGRADED and DRUG, false otherwise.

isValidProteinsType

public static boolean isValidProteinsType(PluginProtein sp)

Parameters:

sp - PluginProtein

Returns:

true if the type of the given PluginProtein is the one of the following fields of this PluginSpeciesSymbolType: PROTEIN_GENERIC, PROTEIN_ION_CHANNEL, PROTEIN_RECEPTOR or PROTEIN_TRUNCATED, false otherwise

getDefaultSize

public static java.awt.Dimension getDefaultSize(java.lang.String speciesType)

Gets the default size of the given speciesType.

Parameters:

speciesType - String

Returns:

size (Dimension)

getDefaultColor

public static java.awt.Color getDefaultColor(java.lang.String speciesType)

Gets the default color of the given speciesType.

Parameters:

speciesType - String

Returns:

color

getDefaultLineWidth

public static double getDefaultLineWidth(java.lang.String speciesType)

Gets the default linewidth of the given speciesType.

Parameters:

speciesType - String

Returns:

linewidth