jp.sbi.celldesigner.plugin

Class PluginSpeciesReference

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

jp.sbi.celldesigner.plugin.PluginSpeciesReference

public class PluginSpeciesReference
extends PluginSimpleSpeciesReference

This class wraps org.sbml.libsbml.SpeciesReference for the plug-in.

Author:

The Systems Biology Institute

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

MODIFIER, PRODUCT, REACTANT

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Constructor and Description
PluginSpeciesReference(PluginReaction parent, PluginSpeciesAlias alias) Constructor

Method Summary

Modifier and Type	Method and Description
double	getStoichiometry()
org.sbml.libsbml.StoichiometryMath	getStoichiometryMath()
void	setStoichiometry(double stoichiometry) Sets the stoichiometry of this PluginSpeciesReference.
void	setStoichiometryMath(org.sbml.libsbml.ASTNode stoichiometry) Sets the stoichiometry of this PluginSpeciesReference.
void	setStoichiometryMath(org.sbml.libsbml.StoichiometryMath stoichiometry) Sets the stoichiometryMath of this PluginSpeciesReference.
void	setStoichiometryMath(java.lang.String stoichiometry) Sets the stoichiometryMath of this PluginSpeciesReference.

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

getAlias, getParentReaction, getParentReactionID, getReferenceType, getSpecies, getSpeciesInstance, setAlias, setReferenceType

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginSpeciesReference

public PluginSpeciesReference(PluginReaction parent,
                              PluginSpeciesAlias alias)

Constructor

Parameters:

parent - the PluginReaction as the parent of this PluginSpeciesReference

alias - PluginSpeciesAlias

Method Detail

getStoichiometry

public double getStoichiometry()

Returns:

the stoichiometry of this PluginSpeciesReference

setStoichiometry

public void setStoichiometry(double stoichiometry)

Sets the stoichiometry of this PluginSpeciesReference.

Parameters:

stoichiometry - double

getStoichiometryMath

public org.sbml.libsbml.StoichiometryMath getStoichiometryMath()

Returns:

the stoichiometryMath of this PluginSpeciesReference.

setStoichiometryMath

public void setStoichiometryMath(org.sbml.libsbml.StoichiometryMath stoichiometry)

Sets the stoichiometryMath of this PluginSpeciesReference.

Parameters:

stoichiometry - ASTNode

setStoichiometryMath

public void setStoichiometryMath(org.sbml.libsbml.ASTNode stoichiometry)

Sets the stoichiometry of this PluginSpeciesReference.

Parameters:

stoichiometry - ASTNode

setStoichiometryMath

public void setStoichiometryMath(java.lang.String stoichiometry)

Sets the stoichiometryMath of this PluginSpeciesReference.

Parameters:

stoichiometry - String