jp.sbi.celldesigner.plugin

Class PluginGene

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginGene

public class PluginGene
extends PluginSBase

This class represents gene.

Author:

The Systems Biology Institute

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	PluginGene() Constructor
protected	PluginGene(java.lang.String extensionId) Constructor

Method Summary

Modifier and Type	Method and Description
void	addPluginModificationRegion(PluginModificationRegion residue) Adds a PluginModificationRegion to the list.
java.lang.String	getExtensionId()
PluginListOf	getListOfPluginRegion()
java.lang.String	getName()
int	getNumRegions()
PluginModificationRegion	getPluginModificationRegion(int index) Gets the PluginModificationRegion with the given index.
java.lang.String	getType()
void	removePluginModificationRegion(int index) Removes the PluginModificationRegion with the given index from the list.
void	removePluginModificationRegion(PluginModificationRegion residue) Removes the given PluginModificationRegion from the list.
void	setListOfPluginRegion(PluginListOf listOfPluginRegion) Sets the list of PluginModificationRegion of this PluginGene.
void	setName(java.lang.String name) Sets the name of this PluginGene.
void	setType(java.lang.String type) Sets the type of this PluginGene.
void	update(PluginGene rna) Update all properties of this PluginGene to the same as the given PluginGene.

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginGene

protected PluginGene()

Constructor

PluginGene

protected PluginGene(java.lang.String extensionId)

Constructor

Parameters:

extensionId - String

Method Detail

update

public void update(PluginGene rna)

Update all properties of this PluginGene to the same as the given PluginGene.

Parameters:

rna - PluginGene

getExtensionId

public java.lang.String getExtensionId()

Returns:

the extensionId of this PluginGene.

getName

public java.lang.String getName()

Returns:

the name of this PluginGene.

setName

public void setName(java.lang.String name)

Sets the name of this PluginGene.

Parameters:

name - String

getType

public java.lang.String getType()

Returns:

the type of this PluginGene.

setType

public void setType(java.lang.String type)

Sets the type of this PluginGene.

Parameters:

type - String

getListOfPluginRegion

public PluginListOf getListOfPluginRegion()

Returns:

the list of PluginModificationRegion of this PluginGene

setListOfPluginRegion

public void setListOfPluginRegion(PluginListOf listOfPluginRegion)

Sets the list of PluginModificationRegion of this PluginGene.

Parameters:

listOfPluginRegion - PluginListOf

addPluginModificationRegion

public void addPluginModificationRegion(PluginModificationRegion residue)

Adds a PluginModificationRegion to the list.

Parameters:

residue - PluginModificationRegion

removePluginModificationRegion

public void removePluginModificationRegion(PluginModificationRegion residue)

Removes the given PluginModificationRegion from the list.

Parameters:

residue - PluginModificationRegion

removePluginModificationRegion

public void removePluginModificationRegion(int index)

Removes the PluginModificationRegion with the given index from the list.

Parameters:

index - int

getPluginModificationRegion

public PluginModificationRegion getPluginModificationRegion(int index)

Gets the PluginModificationRegion with the given index.

Parameters:

index - int

Returns:

PluginModificationRegion

getNumRegions

public int getNumRegions()

Returns:

the number of PluginModificationRegion.