jp.sbi.celldesigner.plugin

Class PluginAntiSenseRNA

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginAntiSenseRNA

public class PluginAntiSenseRNA
extends PluginSBase

This class represents anti sense RNA.

Author:

The Systems Biology Institute

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	PluginAntiSenseRNA() Constructor
protected	PluginAntiSenseRNA(java.lang.String extensionId) Constructor

Method Summary

Modifier and Type	Method and Description
void	addPluginModificationRegion(PluginModificationRegion residue) Adds PluginModificationRegion
java.lang.String	getExtensionId()
PluginListOf	getListOfPluginRegion()
java.lang.String	getName()
int	getNumRegions()
PluginModificationRegion	getPluginModificationRegion(int index) Gets the PluginModificationRegion with the given index.
java.lang.String	getType()
void	removePluginModificationRegion(int index) Remove the PluginModificationRegion with the given index.
void	removePluginModificationRegion(PluginModificationRegion residue) Removes the given PluginModificationRegion.
void	setListOfPluginRegion(PluginListOf listOfPluginRegion) Sets the list of PluginModificationRegion
void	setName(java.lang.String name) Sets the name of this PluginAntiSenseRNA
void	setType(java.lang.String type) Sets the type of this PluginAntiSenseRNA
void	update(PluginAntiSenseRNA rna) Updates all properties to the same as the given PluginAntiSenseRNA.

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginAntiSenseRNA

protected PluginAntiSenseRNA()

Constructor

PluginAntiSenseRNA

protected PluginAntiSenseRNA(java.lang.String extensionId)

Constructor

Parameters:

extensionId - extensionID is proteinID, rnaID, geneID, or asRNAID

Method Detail

update

public void update(PluginAntiSenseRNA rna)

Updates all properties to the same as the given PluginAntiSenseRNA.

Parameters:

rna - PluginAntiSenseRNA

getExtensionId

public java.lang.String getExtensionId()

Returns:

the extensionId of this PluginAntiSenseRNA

getName

public java.lang.String getName()

Returns:

the name of this PluginAntiSenseRNA

setName

public void setName(java.lang.String name)

Sets the name of this PluginAntiSenseRNA

Parameters:

name - the name of this PluginAntiSenseRNA

getType

public java.lang.String getType()

Returns:

the type of this PluginAntiSenseRNA

setType

public void setType(java.lang.String type)

Sets the type of this PluginAntiSenseRNA

Parameters:

type - the type of this PluginAntiSenseRNA

getListOfPluginRegion

public PluginListOf getListOfPluginRegion()

Returns:

the list of PluginModificationRegion.

setListOfPluginRegion

public void setListOfPluginRegion(PluginListOf listOfPluginRegion)

Sets the list of PluginModificationRegion

Parameters:

listOfPluginRegion - the list of PluginModificationRegion

addPluginModificationRegion

public void addPluginModificationRegion(PluginModificationRegion residue)

Adds PluginModificationRegion

Parameters:

residue - PluginModificationRegion

removePluginModificationRegion

public void removePluginModificationRegion(PluginModificationRegion residue)

Removes the given PluginModificationRegion.

Parameters:

residue - PluginModificationRegion

removePluginModificationRegion

public void removePluginModificationRegion(int index)

Remove the PluginModificationRegion with the given index.

Parameters:

index - int

getPluginModificationRegion

public PluginModificationRegion getPluginModificationRegion(int index)

Gets the PluginModificationRegion with the given index.

Parameters:

index - int

Returns:

PluginModificationRegion

getNumRegions

public int getNumRegions()

Returns:

the number of PluginModificationRegion.