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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginModification
public class PluginModification
ProteinModification An instance represents <modification> tag.
Field Summary | |
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static java.lang.String |
STATE_ACETYLATED
for state field |
static java.lang.String |
STATE_DONT_CARE
for state field |
static java.lang.String |
STATE_EMPTY
for state field |
static java.lang.String |
STATE_GLYCOSYLATED
stateフィールド用の定数 |
static java.lang.String |
STATE_HISTON1
for state field |
static java.lang.String |
STATE_HISTON2
for state field |
static java.lang.String |
STATE_HYDROXYLATED
for state field |
static java.lang.String |
STATE_METHYLATED
for state field |
static java.lang.String |
STATE_MYRISTOYLATED
stateフィールド用の定数 |
static java.lang.String |
STATE_PALMYTOYLATED
stateフィールド用の定数 |
static java.lang.String |
STATE_PHOSPHORYLATED
for state field |
static java.lang.String |
STATE_PRENYLATED
stateフィールド用の定数 |
static java.lang.String |
STATE_PROTONATED
stateフィールド用の定数 |
static java.lang.String |
STATE_SULFATED
stateフィールド用の定数 |
static java.lang.String |
STATE_UBIQUITINATED
for state field |
static java.lang.String |
STATE_UNKNOWN
for state field |
Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
---|---|
PluginModification()
Constructor |
|
PluginModification(java.lang.String residue)
Constructor |
|
PluginModification(java.lang.String residue,
java.lang.String state)
Constructor |
Method Summary | |
---|---|
protected void |
clone(jp.sbi.celldesigner.sbmlExtension.Modification modification)
Clones this PluginModification |
boolean |
equals(PluginModification target)
Compares the given PluginModification to this PluginModification |
java.lang.String |
getLabel()
Gets the text of label for the state |
java.lang.String |
getResidue()
|
java.lang.String |
getState()
|
void |
setResidue(java.lang.String residue)
Sets the id of residue of this PluginModification. |
void |
setState(java.lang.String state)
Sets the state of this PluginModification to the given string. |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String STATE_PHOSPHORYLATED
public static final java.lang.String STATE_ACETYLATED
public static final java.lang.String STATE_UBIQUITINATED
public static final java.lang.String STATE_METHYLATED
public static final java.lang.String STATE_HYDROXYLATED
public static final java.lang.String STATE_EMPTY
public static final java.lang.String STATE_DONT_CARE
public static final java.lang.String STATE_UNKNOWN
public static final java.lang.String STATE_GLYCOSYLATED
public static final java.lang.String STATE_MYRISTOYLATED
public static final java.lang.String STATE_PALMYTOYLATED
public static final java.lang.String STATE_PRENYLATED
public static final java.lang.String STATE_PROTONATED
public static final java.lang.String STATE_SULFATED
public static final java.lang.String STATE_HISTON1
public static final java.lang.String STATE_HISTON2
Constructor Detail |
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public PluginModification()
public PluginModification(java.lang.String residue)
residue
- the id of PluginModificationResiduepublic PluginModification(java.lang.String residue, java.lang.String state)
residue
- the id of PluginModificationResiduestate
- the type of state. state is the one of the following fields
of this PluginModification: STATE_PHOSPHORYLATED, STATE_ACETYLATED,
STATE_UBIQUITINATED, STATE_METHYLATED, STATE_HYDROXYLATED, STATE_EMPTY,
STATE_DONT_CARE, STATE_UNKNOWN, STATE_HISTON1 and STATE_HISTON2Method Detail |
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protected void clone(jp.sbi.celldesigner.sbmlExtension.Modification modification)
modification
- Modificationpublic boolean equals(PluginModification target)
target
- PluginModification
public void setResidue(java.lang.String residue)
residue
- the id of residuepublic java.lang.String getResidue()
public void setState(java.lang.String state)
state
- public java.lang.String getState()
public java.lang.String getLabel()
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