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java.lang.Object jp.sbi.celldesigner.plugin.PluginModelBuilder
public class PluginModelBuilder
Field Summary | |
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static java.lang.String |
ANNOTATION
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Constructor Summary | |
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PluginModelBuilder(jp.sbi.celldesigner.SBModel value)
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Method Summary | |
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PluginAntiSenseRNA |
convertToPluginAntiSenseRNA(jp.sbi.celldesigner.sbmlExtension.AntiSenseRNA target)
Converts AntiSenseRNA to PluginAntiSenseRNA |
PluginCompartment |
convertToPluginCompartment(Compartment compartment,
jp.sbi.celldesigner.sbmlExtension.CompartmentAnnotation annotation)
Converts Compartment to PluginCompartment |
PluginGene |
convertToPluginGene(jp.sbi.celldesigner.sbmlExtension.Gene target)
Converts Gene to PluginGene |
PluginKineticLaw |
convertToPluginKineticLaw(KineticLaw law,
PluginReaction parent)
Converts KineticLaw to PluginKineticLaw |
PluginModel |
convertToPluginModel(Model model)
Converts Model to PluginModel |
PluginModel |
convertToPluginModel(Model model,
jp.sbi.celldesigner.SBModel sbModel)
Converts Model to PluginModel |
PluginReaction |
convertToPluginReaction(Reaction reaction,
jp.sbi.celldesigner.sbmlExtension.ReactionAnnotation annotation)
Converts Reaction to PluginReaction |
PluginRNA |
convertToPluginRNA(jp.sbi.celldesigner.sbmlExtension.RNA target)
Converts RNA to PluginRNA |
PluginSBase |
convertToPluginSBase(SBase sbase)
Converts SBase to PluginSBase |
PluginSpecies |
convertToPluginSpecies(Species species,
jp.sbi.celldesigner.sbmlExtension.SpeciesAnnotation annotation)
Converts Species to PluginSpecies |
PluginSpeciesAlias |
convertToPluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias alias,
PluginSpecies parent)
Convers SpeciesAlias to PluginSpeciesAlias |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String ANNOTATION
Constructor Detail |
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public PluginModelBuilder(jp.sbi.celldesigner.SBModel value)
Method Detail |
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public PluginSpeciesAlias convertToPluginSpeciesAlias(jp.sbi.celldesigner.SpeciesAlias alias, PluginSpecies parent)
alias
- parent
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public PluginSBase convertToPluginSBase(SBase sbase)
sbase
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public PluginModel convertToPluginModel(Model model)
model
- public PluginModel convertToPluginModel(Model model, jp.sbi.celldesigner.SBModel sbModel)
model
- sbModel
- public PluginGene convertToPluginGene(jp.sbi.celldesigner.sbmlExtension.Gene target)
target
- Genepublic PluginAntiSenseRNA convertToPluginAntiSenseRNA(jp.sbi.celldesigner.sbmlExtension.AntiSenseRNA target)
target
- public PluginRNA convertToPluginRNA(jp.sbi.celldesigner.sbmlExtension.RNA target)
target
- RNApublic PluginSpecies convertToPluginSpecies(Species species, jp.sbi.celldesigner.sbmlExtension.SpeciesAnnotation annotation)
species
- annotation
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public PluginReaction convertToPluginReaction(Reaction reaction, jp.sbi.celldesigner.sbmlExtension.ReactionAnnotation annotation)
reaction
- annotation
- public PluginCompartment convertToPluginCompartment(Compartment compartment, jp.sbi.celldesigner.sbmlExtension.CompartmentAnnotation annotation)
compartment
- annotation
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public PluginKineticLaw convertToPluginKineticLaw(KineticLaw law, PluginReaction parent)
law
- parent
-
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