- systems-biology.org - A portal site for Systems Biology
- The Systems Biology Institute
- JST ERATO Kitano Symbiotic Systems Project ( - 2008)
- Mizuho Information & Research Institute
- Mitsui Knowledge Industry Co. Ltd.
- Dept. of Biosience and Informatics, Keio University
- Okinawa Institute of Science ance Technology
- SBML ODE Solever
- COPASI
- SABIO-RK
- SBMLsimulator
- BioModels.Net - SBML models database
- PANTHER Pathway Database - Pathways database using CellDesigner Lite
- PAYAO : Community Pathway Curation web service
- iPathways : iApplication for Pathway browsing on iPhone/iPad
- iPathways+ : Web-based CellDesigner Pathway visualizer + sharing pathway with SNSs and Web embedding
- Garuda Alliance
-
Genome Network Platform
- SBML - Systems Biology Markup Language
- SBGN - Systems Biology Graphical Notation
- SBW - Systems Biology Workbench
- SBO - Systems Biology Ontology
- SED-ML - Simulation Experiment Description Markup Language
