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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginModificationResidue
public class PluginModificationResidue
Class for modification residue. An instance corresponds a <modificationResidue> tag.
CellDesigner extention of SBML definition
ModificationResidue |
id : SId name : string {use="optional"} side : string {use="optional"} |
The "id" which may a SId type string in the SBML definition, is treated as a String. When it is input or output, format check is done. If it fails, an SIdFormatException is thrown.
Field Summary | |
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static java.lang.String |
SIDE_INSIDE
constants for side field |
static java.lang.String |
SIDE_NONE
constants for side field |
static java.lang.String |
SIDE_OUTSIDE
constants for side field |
static java.lang.String |
TYPE_BINDINGREGION
constants for type field |
static java.lang.String |
TYPE_RESIDUE
constants for type field |
Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
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PluginModificationResidue(PluginProtein parentProtein)
Constructor |
Method Summary | |
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double |
getAngle()
|
java.lang.String |
getId()
|
java.lang.String |
getName()
|
java.lang.String |
getParentID()
|
PluginProtein |
getParentProtein()
|
java.lang.String |
getSide()
|
double |
getSize()
gets size |
java.lang.String |
getType()
gets type |
void |
setAngle(double angle)
Sets the angle of this PluginModificationResidue. |
protected void |
setId(java.lang.String id)
Sets the id of this PluginModificationResidue. |
void |
setName(java.lang.String name)
Sets the name of this PluginModificationResidue. |
void |
setSide(java.lang.String side)
Sets the type of side of this PluginModificationResidue |
void |
setSize(double size)
sets size |
void |
setType(java.lang.String type)
sets type |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String SIDE_NONE
public static final java.lang.String SIDE_INSIDE
public static final java.lang.String SIDE_OUTSIDE
public static final java.lang.String TYPE_RESIDUE
public static final java.lang.String TYPE_BINDINGREGION
Constructor Detail |
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public PluginModificationResidue(PluginProtein parentProtein)
parentProtein
- the PluginProtein as the parent of this PluginModificationResidueMethod Detail |
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public void setName(java.lang.String name)
name
- public java.lang.String getName()
public void setType(java.lang.String type)
type
- public java.lang.String getType()
public void setSize(double size)
size
- public double getSize()
public void setSide(java.lang.String side)
side
- A side is the following static field for side of
PluginModificationResidue:
SIDE_NONE, SIDE_INSIDE and SIDE_OUTSIDEpublic java.lang.String getSide()
public void setAngle(double angle)
angle
- public double getAngle()
public java.lang.String getId()
protected void setId(java.lang.String id)
id
- public java.lang.String getParentID()
public PluginProtein getParentProtein()
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