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java.lang.Object jp.sbi.celldesigner.plugin.PluginSBase jp.sbi.celldesigner.plugin.PluginGene
public class PluginGene
This class represents gene.
Field Summary |
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Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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sbase |
Constructor Summary | |
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protected |
PluginGene()
Constructor |
protected |
PluginGene(java.lang.String extensionId)
Constructor |
Method Summary | |
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void |
addPluginModificationRegion(PluginModificationRegion residue)
Adds a PluginModificationRegion to the list. |
java.lang.String |
getExtensionId()
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PluginListOf |
getListOfPluginRegion()
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java.lang.String |
getName()
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int |
getNumRegions()
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PluginModificationRegion |
getPluginModificationRegion(int index)
Gets the PluginModificationRegion with the given index. |
java.lang.String |
getType()
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void |
removePluginModificationRegion(int index)
Removes the PluginModificationRegion with the given index from the list. |
void |
removePluginModificationRegion(PluginModificationRegion residue)
Removes the given PluginModificationRegion from the list. |
void |
setListOfPluginRegion(PluginListOf listOfPluginRegion)
Sets the list of PluginModificationRegion of this PluginGene. |
void |
setName(java.lang.String name)
Sets the name of this PluginGene. |
void |
setType(java.lang.String type)
Sets the type of this PluginGene. |
void |
update(PluginGene rna)
Update all properties of this PluginGene to the same as the given PluginGene. |
Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase |
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addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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protected PluginGene()
protected PluginGene(java.lang.String extensionId)
extensionId
- Method Detail |
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public void update(PluginGene rna)
rna
- PluginGenepublic java.lang.String getExtensionId()
public java.lang.String getName()
public void setName(java.lang.String name)
name
- public java.lang.String getType()
public void setType(java.lang.String type)
type
- public PluginListOf getListOfPluginRegion()
public void setListOfPluginRegion(PluginListOf listOfPluginRegion)
listOfPluginRegion
- public void addPluginModificationRegion(PluginModificationRegion residue)
residue
- public void removePluginModificationRegion(PluginModificationRegion residue)
residue
- public void removePluginModificationRegion(int index)
index
- public PluginModificationRegion getPluginModificationRegion(int index)
index
-
public int getNumRegions()
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