CellDesigner 4.1 Help

Save / Open the Results of Simulation (File I/O)

The result of a simulation is stored in three file types:

The model file (SBML) has a one-to-one correspondence with the simulation condition file (*.sim).

For example, if you stored the results of two simulations run by model1.xml and newmodel.xml into the "models" directory, the contents of the directory will be:

[models]
+------------model1.xml (SBML)
+------------model1.sim (parameters setting for the model 1)
+------------[model1] (the result folder for the model 1)
+--------------result1.txt (simulation result 1)
+--------------result2.txt (simulation result 2)
+
…………..
+------------newmodel.xml (a new model)
+------------newmodel.sim (parameters setting for the new model)
+------------[newmodel] (the result folder for the new model)
+-----------------result1.txt (simulation result 1)
+-----------------result2.txt (simulation result 2)

To save a simulation result into files:

  1. Select Save As from the File menu of ControlPanel.
  2. Enter the file name for a simulation result and click the save button.
  3. Then three types of file having extensions ".xml", ".sim", and ".txt" are created.

To open a result saved in files:

  1. Select Open from the File menu of CellDesigner.
  2. Select an SBML (.xml) file and click the Open button.
  3. The corresponding condition (.sim) file and result (*.txt) files are automatically imported so that you can start the ControlPanel and see the result.
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