CellDesigner 4.1 Help

Quick Tutorial of Simulation with Control Panel

Before you start

Throughout this tutorial, we will use MAPK.xml which can be found in the <CellDesigner installation directory>/samples folder. All the formulae necessary for the simulation are already input to the reactions. You can check the formulae in the CellDesigner’s Reactions list.

To run a basic simulation:

  1. Open the sample file MAPK.xml in the samples folder.
  2. In the Menu, select Simulation - ControlPanel.
  3. Control Panel will open.
  4. Click Execute button at the bottom.
  5. A graph will be drawn in the right window.
  6. By default, the simulation time end is set to 100 and number of points to plot is 100. You can enter values into End Time and Num.of Points to change these values.
    Change the End Time value to [1,000].
  7. Click Execute button.

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