CellDesigner Help

The Reaction dialog

Each Reaction's id is given automatically by CellDesigner while its name is not.

ReactionLink = BaseLink + ReactantLink + ProductLink + ModificationLink

To edit the contents of the reaction

  1. In the Reactions tab in the List Area, double-click a Reaction you want to edit.
  2. Or, in the Draw Area, right-click on a Reaction, then select Edit Reaction... menu.
  3. Reaction dialog appears.
  4. You can directly edit the name inline in the Reactions list.
    If you double-click on a cell which cannot be edit inline, the dialog will pop-up.

  5. Edit the data.

Details on each property

id Cannot be modified.
name Cannot be modified. (*1)
reversible Cannot be modified.(*1)
fast Defined as an SBML model.
listOfReactants
  • Click Edit button or double-click on a row to show SpeciesReference dialog.
  • Click Export button to save all the data for the Reaction in CSV format.
stoichiometry Defined as an SBML model.
stoichiometryMath Defined as an SBML model.
listOfProducts
  • Double-click on a row to show SpeciesReference dialog.
  • Click Export button to save all the data for the Reaction in CSV format.
stoichiometry Defined as an SBML model.
stoichiometryMath Defined as an SBML model.
listOfModifiers Click Export button to save all the data for the Reaction in CSV format.

(*1) To change these properties, do one of the following procedures.

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