jp.sbi.celldesigner.plugin

Class PluginModifierSpeciesReference

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

jp.sbi.celldesigner.plugin.PluginModifierSpeciesReference

public class PluginModifierSpeciesReference
extends PluginSimpleSpeciesReference

This class wraps org.sbml.libsbml.ModifierSpeciesReference for the plug-in.

Author:

The Systems Biology Institute

See Also:

ModifierSpeciesReference

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

MODIFIER, PRODUCT, REACTANT

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Constructor and Description
PluginModifierSpeciesReference(PluginReaction parent, PluginSpeciesAlias alias) Constructor

Method Summary

Modifier and Type	Method and Description
java.lang.String	getModificationType()
void	setModificationType(java.lang.String modificationType) Sets the modificationType of this PluginModifierSpeciesReference.

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

getAlias, getParentReaction, getParentReactionID, getReferenceType, getSpecies, getSpeciesInstance, setAlias, setReferenceType

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginModifierSpeciesReference

public PluginModifierSpeciesReference(PluginReaction parent,
                                      PluginSpeciesAlias alias)

Constructor

Parameters:

parent - PluginReaction

alias - PluginSpeciesAlias

Method Detail

getModificationType

public java.lang.String getModificationType()

Returns:

modificationType

setModificationType

public void setModificationType(java.lang.String modificationType)

Sets the modificationType of this PluginModifierSpeciesReference. The modificationType is the one of the fiels of PluginReactionSymbolType. See PluginReactionSymbolType.

Parameters:

modificationType - String