CellDesigner Help

Simulation using the ControlPanel

To simulate a model using the ControlPanel

  1. Open the sample file "MAPK.xml" in the "samples" folder.
  2. In the Menu, select Simulation - ControlPanel.
  3. ControlPanel will open.
  4. Change the End Time value to "1000".
  5. Click Execute button.
  6. You will see the time course plot in the right side of the ControlPanel.

To change the solver to COPASI (or SBML Simulation Core library)

  1. In the ControlPanel, click the COPASI radio button.
  2. Click Execute.
    COPASI radio button in ControlPanel

You can select SBML Simulation Core Library as Solver.

To convert the graph to a scatter plot

  1. In the ControlPanel, select any two Species by ticking the checkboxes in the Visible column.
  2. Observe that the graph has been reduced to two curves.
  3. Tick the show scatter plot checkbox.
  4. Observe that in the new graph the x-axis does not indicate time series any more.
  5. Select the reverse checkbox to change the x- and y- axes.
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